PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 573aa    MW: 63418.2 Da    PI: 5.1688
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940507.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.5e-351061982103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++l+ lisw ++g+sfvv+d+ efa+ vLp+ Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k ll++
  XP_010940507.1 106 FLSKTYELVDDPSLDPLISWGSTGRSFVVWDPVEFARAVLPRNFKHSNFSSFVRQLNTYGFHKIDADR---------WEFANEDFLRGNKPLLKN 191
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r++s+
  XP_010940507.1 192 INRRRSS 198
                     ****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-56102195IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.61E-35102195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-36103195IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-17106129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-30106195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-17144156IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340145169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-17157169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MEPARDKPPR LPTRSSSALM GTTMPRRPFE GGSGFPLSSS SSSSSPFMEF GAPSASKSRP  60
SSSVEPKIEQ ASSPVGEKLP SSSSSSPGVA APRPLEALQS APIPPFLSKT YELVDDPSLD  120
PLISWGSTGR SFVVWDPVEF ARAVLPRNFK HSNFSSFVRQ LNTYGFHKID ADRWEFANED  180
FLRGNKPLLK NINRRRSSQV QQVGSQVGFS AENAKPELEG ELHMLRKEKS ALMQEAITLR  240
QEHLMTVQQV DALNQRMQLA EQRQKLMVSF LAKVLQHPVL LAHLKQLKEQ REIASTIRRK  300
FLKQQQHSHS DLDKSMDQQT GKKRLEFTGA TSSGLQGIEC SVSKQLPNNL LQDMVEKPDL  360
DTSRGELLIG SVETGLEVLD PLFLDPDSVA IKVGLPESSH TDMGFSGTEF FASFPEDTTP  420
ERMFSDAIIP ATEFARPDPK TVSFEGKNVV DKTEVTSAGG KCLISFAEDT SQEKMFSDAI  480
ASARKTSSGP EEIWNLCLEA GESSWSSRHW DSLAQDAIEL EAGARPDALW DIDLQALDED  540
LEFDKCLGSY FCHQERENQA GAANKDHKEK MEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2310319817123Heat shock factor protein 1
5d5u_B1e-238619517129Heat shock factor protein 1
5d5v_B1e-238619517129Heat shock factor protein 1
5d5v_D1e-238619517129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940507.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLM0SYW91e-150M0SYW9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P15900_0011e-150(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-77heat shock transcription factor A3